A surface diurnal warm layer is diagnosed from Seaglider observations and develops on half of the days in the Cooperative Indian Ocean Experiment on Intraseasonal Variability/Dynamics of the Madden–Julian Oscillation (CINDY/DYNAMO) Indian Ocean experiment. The diurnal warm layer occurs on days of high solar radiation flux (>80 W m−2) and low wind speed (<6 m s−1) and preferentially in the inactive stage of the Madden–Julian oscillation. Its diurnal harmonic has an exponential vertical structure with a depth scale of 4–5 m (dependent on chlorophyll concentration), consistent with forcing by absorption of solar radiation. The effective sea surface temperature (SST) anomaly due to the diurnal warm layer often reaches 0.8°C in the afternoon, with a daily mean of 0.2°C, rectifying the diurnal cycle onto longer time scales. This SST anomaly drives an anomalous flux of 4 W m−2 that cools the ocean. Alternatively, in a climate model where this process is unresolved, this represents an erroneous flux that warms the ocean. A simple model predicts a diurnal warm layer to occur on 30%–50% of days across the tropical warm pool. On the remaining days, with low solar radiation and high wind speeds, a residual diurnal cycle is observed by the Seaglider, with a diurnal harmonic of temperature that decreases linearly with depth. As wind speed increases, this already weak temperature gradient decreases further, tending toward isothermal conditions.